/Martin Hirst/PX0720_TGCTGG_10_lane_gembs/HHFYJCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 170363794 | 100.00 % | 85181897 | 100.00 % | 85181897 | 100.00 % |
| General Reads | 164430366 | 96.52 % | 83845363 | 98.43 % | 80585003 | 94.60 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 857310 | 0.50 % | 436825 | 0.51 % | 420485 | 0.49 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5076118 | 2.98 % | 899709 | 1.06 % | 4176409 | 4.90 % |
| Bisulfite_reads C2T | 84001314 | 49.31 % | 42829912 | 50.28 % | 41171402 | 48.33 % |
| Bisulfite_reads G2A | 81286362 | 47.71 % | 41452276 | 48.66 % | 39834086 | 46.76 % |
| Concept | Value |
|---|---|
| Unique Fragments | 30967201 |
| Average Unique | 36.35 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8829308004 | 34.32 % | 4569869877 | 35.53 % | 4259438127 | 33.12 % |
| Base Counts Overall C | 3782230316 | 14.70 % | 2017018821 | 15.68 % | 1765211495 | 13.72 % |
| Base Counts Overall G | 4248609168 | 16.52 % | 1938767936 | 15.07 % | 2309841232 | 17.96 % |
| Base Counts Overall T | 8691446555 | 33.79 % | 4250655187 | 33.05 % | 4440791368 | 34.53 % |
| Base Counts Overall N | 173338851 | 0.67 % | 86154626 | 0.67 % | 87184225 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9707807722502791 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 50709377 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 85181897 |
| 150 | 85181897 |
| Insert Size Histogram |
|---|
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