/Martin Hirst/PX0720_TGCTGG_10_lane_gembs/HHFYJCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 163291778 | 100.00 % | 81645889 | 100.00 % | 81645889 | 100.00 % |
| General Reads | 157747314 | 96.60 % | 80302925 | 98.36 % | 77444389 | 94.85 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 820945 | 0.50 % | 417576 | 0.51 % | 403369 | 0.49 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4723519 | 2.89 % | 925388 | 1.13 % | 3798131 | 4.65 % |
| Bisulfite_reads C2T | 80592666 | 49.36 % | 41020444 | 50.24 % | 39572222 | 48.47 % |
| Bisulfite_reads G2A | 77975593 | 47.75 % | 39700057 | 48.62 % | 38275536 | 46.88 % |
| Concept | Value |
|---|---|
| Unique Fragments | 29691825 |
| Average Unique | 36.37 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8468460702 | 34.34 % | 4381889926 | 35.54 % | 4086570776 | 33.15 % |
| Base Counts Overall C | 3627591356 | 14.71 % | 1935709287 | 15.70 % | 1691882069 | 13.72 % |
| Base Counts Overall G | 4059964020 | 16.47 % | 1857717934 | 15.07 % | 2202246086 | 17.86 % |
| Base Counts Overall T | 8335295015 | 33.80 % | 4070949228 | 33.02 % | 4264345787 | 34.59 % |
| Base Counts Overall N | 165747385 | 0.67 % | 82262864 | 0.67 % | 83484521 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9698932343313412 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 48607555 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 81645889 |
| 150 | 81645889 |
| Insert Size Histogram |
|---|
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