/Martin Hirst/mapping_coverage/PX0720_TGCTGG_10_lane_gembs
BACK
SAMPLE PX0720_TGCTGG_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1582973885 |
100% |
221405222957 |
100% |
| Mapped |
1552779799 |
98.09 % |
216876110057 |
97.95 % |
| Passed |
510101117 |
32.22 % |
60474307757 |
27.31 % |
| NotPassed |
1042678682 |
65.87 % |
156401802300 |
70.64 % |
| |
|
|
|
|
| LowMAPQ |
711195650 |
44.93 % |
106679347500 |
48.18 % |
| MateUnmapped |
30194086 |
1.91 % |
4529112900 |
2.05 % |
| Duplicate |
51781010 |
3.27 % |
7767151500 |
3.51 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
9560858 |
0.60 % |
1434128700 |
0.65 % |
| |
|
|
|
|
| NotCorrectlyAligned |
270141164 |
17.07 % |
40521174600 |
18.30 % |
| Unmapped |
30194086 |
1.91 % |
4529112900 |
2.05 % |
Base Level Counts
| Bases |
# |
% |
| Total |
76421979150 |
100% |
| Passed |
55457857384 |
72.57 % |
| Trimmed |
1939776047 |
2.54 % |
| Clipped |
4141116200 |
5.42 % |
| Overlapping |
11806555193 |
15.45 % |
| LowQuality |
3076674326 |
4.03 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |