/Martin Hirst/methylation/PX0720_TGCTGG_10_lane_gembs
BACK
SAMPLE PX0720_TGCTGG_10_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26242415 |
18549471 |
70.69 % |
| NonRefCpG |
514831 |
115673 |
22.47 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6094880 |
12.27 % |
4734069 |
12.03 % |
277138 |
32.05 % |
38052 |
11.95 % |
| Intermediate (0.3-0.7) |
8398131 |
16.90 % |
5007027 |
12.73 % |
223235 |
25.82 % |
55991 |
17.59 % |
| Methylated (0.7-1) |
35185978 |
70.83 % |
29600094 |
75.24 % |
364289 |
42.13 % |
224316 |
70.46 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.850 |
|
0.870 |
|
0.580 |
|
0.850 |
|