/TFF-PPG/mapping_coverage/PX0587_ACCGGC_10_lane_gembs
BACK
SAMPLE PX0587_ACCGGC_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1316396440 |
100% |
181669963543 |
100% |
| Mapped |
1286827400 |
97.75 % |
177234607543 |
97.56 % |
| Passed |
487113586 |
37.00 % |
57277535443 |
31.53 % |
| NotPassed |
799713814 |
60.75 % |
119957072100 |
66.03 % |
| |
|
|
|
|
| LowMAPQ |
533576962 |
40.53 % |
80036544300 |
44.06 % |
| MateUnmapped |
29569040 |
2.25 % |
4435356000 |
2.44 % |
| Duplicate |
44429970 |
3.38 % |
6664495500 |
3.67 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
5136664 |
0.39 % |
770499600 |
0.42 % |
| |
|
|
|
|
| NotCorrectlyAligned |
216570218 |
16.45 % |
32485532700 |
17.88 % |
| Unmapped |
29569040 |
2.25 % |
4435356000 |
2.44 % |
Base Level Counts
| Bases |
# |
% |
| Total |
73003653900 |
100% |
| Passed |
52294022184 |
71.63 % |
| Trimmed |
1855101726 |
2.54 % |
| Clipped |
3381364915 |
4.63 % |
| Overlapping |
12344753542 |
16.91 % |
| LowQuality |
3128411533 |
4.29 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |