/TFF-PPG/methylation/PX0587_ACCGGC_10_lane_gembs
BACK
SAMPLE PX0587_ACCGGC_10_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26290769 |
19225977 |
73.13 % |
| NonRefCpG |
498191 |
138955 |
27.89 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5425073 |
10.80 % |
4231785 |
10.43 % |
240427 |
27.96 % |
33665 |
9.33 % |
| Intermediate (0.3-0.7) |
7695929 |
15.31 % |
4600323 |
11.34 % |
208366 |
24.23 % |
55055 |
15.26 % |
| Methylated (0.7-1) |
37132993 |
73.89 % |
31731697 |
78.23 % |
411234 |
47.82 % |
272006 |
75.41 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.880 |
|
0.670 |
|
0.870 |
|