/CEMT/mapping_coverage/A91239_2_lane_gembs
BACK
SAMPLE A91239_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1403734303 |
100% |
183038230872 |
100% |
| Mapped |
1388220851 |
98.89 % |
180711213072 |
98.73 % |
| Passed |
1184698340 |
84.40 % |
150182836422 |
82.05 % |
| NotPassed |
203522511 |
14.50 % |
30528376650 |
16.68 % |
| |
|
|
|
|
| LowMAPQ |
147611410 |
10.52 % |
22141711500 |
12.10 % |
| MateUnmapped |
15513452 |
1.11 % |
2327017800 |
1.27 % |
| Duplicate |
38599038 |
2.75 % |
5789855700 |
3.16 % |
| BadOrientation |
120 |
0.00 % |
18000 |
0.00 % |
| LargeInsertSize |
16796 |
0.00 % |
2519400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17295147 |
1.23 % |
2594272050 |
1.42 % |
| Unmapped |
15513452 |
1.11 % |
2327017800 |
1.27 % |
Base Level Counts
| Bases |
# |
% |
| Total |
177694354350 |
100% |
| Passed |
138679737462 |
78.04 % |
| Trimmed |
5125562400 |
2.88 % |
| Clipped |
380647175 |
0.21 % |
| Overlapping |
27130870753 |
15.27 % |
| LowQuality |
6377536560 |
3.59 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |