/CEMT/methylation/A91239_2_lane_gembs

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SAMPLE A91239_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27171819 23782993 87.53 %
NonRefCpG 291542 229631 78.76 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A91239_2_lane_gembs_coverage_refCpG.png ./IMG//A91239_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A91239_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A91239_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A91239_2_lane_gembs_quality_refcpg.png ./IMG//A91239_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A91239_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4665330 8.69 % 2485466 5.07 % 36051 6.50 % 13215 2.79 %
Intermediate (0.3-0.7) 6066761 11.30 % 4839763 9.87 % 68240 12.30 % 43358 9.15 %
Methylated (0.7-1) 42965460 80.01 % 41708179 85.06 % 450649 81.21 % 417253 88.06 %
Median Methylation 0.900 0.910 0.900 0.920