/Martin Hirst/PX0720_AAGCGA_10_lane_gembs/HCVFLCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 186500698 | 100.00 % | 93250349 | 100.00 % | 93250349 | 100.00 % |
| General Reads | 183745532 | 98.52 % | 92562912 | 99.26 % | 91182620 | 97.78 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 110207 | 0.06 % | 55500 | 0.06 % | 54707 | 0.06 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2644959 | 1.42 % | 631937 | 0.68 % | 2013022 | 2.16 % |
| Bisulfite_reads C2T | 93166679 | 49.96 % | 46926212 | 50.32 % | 46240467 | 49.59 % |
| Bisulfite_reads G2A | 90689060 | 48.63 % | 45692200 | 49.00 % | 44996860 | 48.25 % |
| Concept | Value |
|---|---|
| Unique Fragments | 36101893 |
| Average Unique | 38.72 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9756868621 | 34.65 % | 5013576077 | 35.61 % | 4743292544 | 33.69 % |
| Base Counts Overall C | 4100140285 | 14.56 % | 2176700769 | 15.46 % | 1923439516 | 13.66 % |
| Base Counts Overall G | 4558135220 | 16.19 % | 2119703458 | 15.05 % | 2438431762 | 17.32 % |
| Base Counts Overall T | 9557353211 | 33.94 % | 4677023864 | 33.22 % | 4880329347 | 34.66 % |
| Base Counts Overall N | 189108061 | 0.67 % | 93798531 | 0.67 % | 95309530 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9676766019115982 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 58835459 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 93250349 |
| 150 | 93250349 |
| Insert Size Histogram |
|---|
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