/Martin Hirst/PX0720_AAGCGA_10_lane_gembs/HF7JYCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 155643908 | 100.00 % | 77821954 | 100.00 % | 77821954 | 100.00 % |
| General Reads | 153088878 | 98.36 % | 77149955 | 99.14 % | 75938923 | 97.58 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 92251 | 0.06 % | 46546 | 0.06 % | 45705 | 0.06 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2462779 | 1.58 % | 625453 | 0.80 % | 1837326 | 2.36 % |
| Bisulfite_reads C2T | 77587939 | 49.85 % | 39097682 | 50.24 % | 38490257 | 49.46 % |
| Bisulfite_reads G2A | 75593190 | 48.57 % | 38098819 | 48.96 % | 37494371 | 48.18 % |
| Concept | Value |
|---|---|
| Unique Fragments | 29446116 |
| Average Unique | 37.84 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8172876066 | 34.77 % | 4187502060 | 35.63 % | 3985374006 | 33.91 % |
| Base Counts Overall C | 3404400936 | 14.49 % | 1813760516 | 15.43 % | 1590640420 | 13.54 % |
| Base Counts Overall G | 3829834870 | 16.30 % | 1781281611 | 15.16 % | 2048553259 | 17.43 % |
| Base Counts Overall T | 7937346402 | 33.77 % | 3889817834 | 33.10 % | 4047528568 | 34.44 % |
| Base Counts Overall N | 157771834 | 0.67 % | 78753033 | 0.67 % | 79018801 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9642130872786908 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 48291670 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 77821954 |
| 150 | 77821954 |
| Insert Size Histogram |
|---|
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