/Martin Hirst/PX0720_AAGCGA_10_lane_gembs/HF7JYCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 157439718 | 100.00 % | 78719859 | 100.00 % | 78719859 | 100.00 % |
| General Reads | 154900286 | 98.39 % | 78059175 | 99.16 % | 76841111 | 97.61 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 93841 | 0.06 % | 47348 | 0.06 % | 46493 | 0.06 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2445591 | 1.55 % | 613336 | 0.78 % | 1832255 | 2.33 % |
| Bisulfite_reads C2T | 78534070 | 49.88 % | 39573193 | 50.27 % | 38960877 | 49.49 % |
| Bisulfite_reads G2A | 76460057 | 48.56 % | 38533330 | 48.95 % | 37926727 | 48.18 % |
| Concept | Value |
|---|---|
| Unique Fragments | 29923746 |
| Average Unique | 38.01 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8267312711 | 34.78 % | 4241121010 | 35.68 % | 4026191701 | 33.87 % |
| Base Counts Overall C | 3442175112 | 14.48 % | 1836320676 | 15.45 % | 1605854436 | 13.51 % |
| Base Counts Overall G | 3869831690 | 16.28 % | 1794088745 | 15.09 % | 2075742945 | 17.46 % |
| Base Counts Overall T | 8033819988 | 33.79 % | 3935515591 | 33.11 % | 4098304397 | 34.48 % |
| Base Counts Overall N | 160257917 | 0.67 % | 79652687 | 0.67 % | 80605230 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9662619586204199 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 49050280 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 78719859 |
| 150 | 78719859 |
| Insert Size Histogram |
|---|
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