/Martin Hirst/PX0720_AAGCGA_10_lane_gembs/HF7JYCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 157857472 | 100.00 % | 78928736 | 100.00 % | 78928736 | 100.00 % |
| General Reads | 155406040 | 98.45 % | 78272039 | 99.17 % | 77134001 | 97.73 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 94506 | 0.06 % | 47806 | 0.06 % | 46700 | 0.06 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2356926 | 1.49 % | 608891 | 0.77 % | 1748035 | 2.21 % |
| Bisulfite_reads C2T | 78767152 | 49.90 % | 39670087 | 50.26 % | 39097065 | 49.53 % |
| Bisulfite_reads G2A | 76733394 | 48.61 % | 38649758 | 48.97 % | 38083636 | 48.25 % |
| Concept | Value |
|---|---|
| Unique Fragments | 30031977 |
| Average Unique | 38.05 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8291694961 | 34.79 % | 4250311426 | 35.66 % | 4041383535 | 33.91 % |
| Base Counts Overall C | 3453737323 | 14.49 % | 1839968076 | 15.44 % | 1613769247 | 13.54 % |
| Base Counts Overall G | 3876091369 | 16.26 % | 1800968718 | 15.11 % | 2075122651 | 17.41 % |
| Base Counts Overall T | 8054411131 | 33.79 % | 3947175297 | 33.12 % | 4107235834 | 34.46 % |
| Base Counts Overall N | 160543488 | 0.67 % | 79815619 | 0.67 % | 80727869 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9660564055571792 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 49270253 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 78928736 |
| 150 | 78928736 |
| Insert Size Histogram |
|---|
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