/Martin Hirst/PX0720_AAGCGA_10_lane_gembs/HF7JYCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 159110654 | 100.00 % | 79555327 | 100.00 % | 79555327 | 100.00 % |
| General Reads | 156357871 | 98.27 % | 78896042 | 99.17 % | 77461829 | 97.37 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 94228 | 0.06 % | 47666 | 0.06 % | 46562 | 0.06 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2658555 | 1.67 % | 611619 | 0.77 % | 2046936 | 2.57 % |
| Bisulfite_reads C2T | 79255755 | 49.81 % | 39987713 | 50.26 % | 39268042 | 49.36 % |
| Bisulfite_reads G2A | 77196344 | 48.52 % | 38955995 | 48.97 % | 38240349 | 48.07 % |
| Concept | Value |
|---|---|
| Unique Fragments | 30128309 |
| Average Unique | 37.87 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8358210457 | 34.79 % | 4283699933 | 35.66 % | 4074510524 | 33.92 % |
| Base Counts Overall C | 3477352963 | 14.47 % | 1853121880 | 15.43 % | 1624231083 | 13.52 % |
| Base Counts Overall G | 3914012954 | 16.29 % | 1816290256 | 15.12 % | 2097722698 | 17.46 % |
| Base Counts Overall T | 8113139360 | 33.77 % | 3979063787 | 33.12 % | 4134075573 | 34.41 % |
| Base Counts Overall N | 162993020 | 0.68 % | 80678521 | 0.67 % | 82314499 | 0.69 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9664969101756574 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 49376098 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 79555327 |
| 150 | 79555327 |
| Insert Size Histogram |
|---|
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