/Martin Hirst/PX0720_AAGCGA_10_lane_gembs/HHFYJCCXY_4_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 169226380 | 100.00 % | 84613190 | 100.00 % | 84613190 | 100.00 % |
| General Reads | 165157534 | 97.60 % | 83848193 | 99.10 % | 81309341 | 96.10 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 103629 | 0.06 % | 52495 | 0.06 % | 51134 | 0.06 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3965217 | 2.34 % | 712502 | 0.84 % | 3252715 | 3.84 % |
| Bisulfite_reads C2T | 83701368 | 49.46 % | 42485823 | 50.21 % | 41215545 | 48.71 % |
| Bisulfite_reads G2A | 81559795 | 48.20 % | 41414865 | 48.95 % | 40144930 | 47.45 % |
| Concept | Value |
|---|---|
| Unique Fragments | 31334505 |
| Average Unique | 37.03 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8812343462 | 34.49 % | 4542617395 | 35.55 % | 4269726067 | 33.42 % |
| Base Counts Overall C | 3718362602 | 14.55 % | 1973104966 | 15.44 % | 1745257636 | 13.66 % |
| Base Counts Overall G | 4154719412 | 16.26 % | 1926284648 | 15.08 % | 2228434764 | 17.44 % |
| Base Counts Overall T | 8696679824 | 34.03 % | 4248893099 | 33.26 % | 4447786725 | 34.81 % |
| Base Counts Overall N | 171078080 | 0.67 % | 85691582 | 0.67 % | 85386498 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9658284196268436 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 50544504 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 84613190 |
| 150 | 84613190 |
| Insert Size Histogram |
|---|
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