/Martin Hirst/PX0720_AAGCGA_10_lane_gembs/HHFYJCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 169091432 | 100.00 % | 84545716 | 100.00 % | 84545716 | 100.00 % |
| General Reads | 164639649 | 97.37 % | 83782320 | 99.10 % | 80857329 | 95.64 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 102881 | 0.06 % | 52328 | 0.06 % | 50553 | 0.06 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4348902 | 2.57 % | 711068 | 0.84 % | 3637834 | 4.30 % |
| Bisulfite_reads C2T | 83416955 | 49.33 % | 42440474 | 50.20 % | 40976481 | 48.47 % |
| Bisulfite_reads G2A | 81325575 | 48.10 % | 41394174 | 48.96 % | 39931401 | 47.23 % |
| Concept | Value |
|---|---|
| Unique Fragments | 31114200 |
| Average Unique | 36.80 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8794304294 | 34.44 % | 4542670337 | 35.58 % | 4251633957 | 33.30 % |
| Base Counts Overall C | 3717889147 | 14.56 % | 1976420003 | 15.48 % | 1741469144 | 13.64 % |
| Base Counts Overall G | 4165284775 | 16.31 % | 1919845911 | 15.04 % | 2245438864 | 17.59 % |
| Base Counts Overall T | 8684133189 | 34.01 % | 4241911025 | 33.23 % | 4442222164 | 34.80 % |
| Base Counts Overall N | 171194827 | 0.67 % | 85555840 | 0.67 % | 85638987 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9657498800906372 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 50157661 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 84545716 |
| 150 | 84545716 |
| Insert Size Histogram |
|---|
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