/Martin Hirst/PX0720_AAGCGA_10_lane_gembs/HHFYJCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 160687540 | 100.00 % | 80343770 | 100.00 % | 80343770 | 100.00 % |
| General Reads | 156468772 | 97.37 % | 79481181 | 98.93 % | 76987591 | 95.82 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 98546 | 0.06 % | 50156 | 0.06 % | 48390 | 0.06 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4120222 | 2.56 % | 812433 | 1.01 % | 3307789 | 4.12 % |
| Bisulfite_reads C2T | 79306953 | 49.35 % | 40279475 | 50.13 % | 39027478 | 48.58 % |
| Bisulfite_reads G2A | 77260365 | 48.08 % | 39251862 | 48.85 % | 38008503 | 47.31 % |
| Concept | Value |
|---|---|
| Unique Fragments | 29337849 |
| Average Unique | 36.52 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8358903552 | 34.45 % | 4313102955 | 35.55 % | 4045800597 | 33.35 % |
| Base Counts Overall C | 3529745717 | 14.55 % | 1883854567 | 15.53 % | 1645891150 | 13.57 % |
| Base Counts Overall G | 3913288996 | 16.13 % | 1824270805 | 15.04 % | 2089018191 | 17.22 % |
| Base Counts Overall T | 8298925235 | 34.20 % | 4029379233 | 33.21 % | 4269546002 | 35.19 % |
| Base Counts Overall N | 162955040 | 0.67 % | 81301710 | 0.67 % | 81653330 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9639928638990711 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 47210337 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 80343770 |
| 150 | 80343770 |
| Insert Size Histogram |
|---|
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