/Martin Hirst/PX0720_AAGCGA_10_lane_gembs/HHFYJCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 166348166 | 100.00 % | 83174083 | 100.00 % | 83174083 | 100.00 % |
| General Reads | 161628961 | 97.16 % | 82418457 | 99.09 % | 79210504 | 95.23 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 100505 | 0.06 % | 51228 | 0.06 % | 49277 | 0.06 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4618700 | 2.78 % | 704398 | 0.85 % | 3914302 | 4.71 % |
| Bisulfite_reads C2T | 81891622 | 49.23 % | 41752448 | 50.20 % | 40139174 | 48.26 % |
| Bisulfite_reads G2A | 79837844 | 47.99 % | 40717237 | 48.95 % | 39120607 | 47.03 % |
| Concept | Value |
|---|---|
| Unique Fragments | 30506438 |
| Average Unique | 36.68 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8644981686 | 34.42 % | 4472905512 | 35.61 % | 4172076174 | 33.22 % |
| Base Counts Overall C | 3659017481 | 14.57 % | 1943113959 | 15.47 % | 1715903522 | 13.66 % |
| Base Counts Overall G | 4111898025 | 16.37 % | 1885672532 | 15.01 % | 2226225493 | 17.73 % |
| Base Counts Overall T | 8533393348 | 33.97 % | 4173464724 | 33.23 % | 4359928624 | 34.71 % |
| Base Counts Overall N | 169282526 | 0.67 % | 84129806 | 0.67 % | 85152720 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.965853683575481 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 49087318 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 83174083 |
| 150 | 83174083 |
| Insert Size Histogram |
|---|
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