/Martin Hirst/PX0720_AAGCGA_10_lane_gembs/HHFYJCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 159470080 | 100.00 % | 79735040 | 100.00 % | 79735040 | 100.00 % |
| General Reads | 155073651 | 97.24 % | 78944611 | 99.01 % | 76129040 | 95.48 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 95762 | 0.06 % | 48854 | 0.06 % | 46908 | 0.06 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4300667 | 2.70 % | 741575 | 0.93 % | 3559092 | 4.46 % |
| Bisulfite_reads C2T | 78583909 | 49.28 % | 39999768 | 50.17 % | 38584141 | 48.39 % |
| Bisulfite_reads G2A | 76585504 | 48.02 % | 38993697 | 48.90 % | 37591807 | 47.15 % |
| Concept | Value |
|---|---|
| Unique Fragments | 29244437 |
| Average Unique | 36.68 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 8292120577 | 34.44 % | 4288846152 | 35.62 % | 4003274425 | 33.25 % |
| Base Counts Overall C | 3509901145 | 14.58 % | 1865040845 | 15.49 % | 1644860300 | 13.66 % |
| Base Counts Overall G | 3931064138 | 16.33 % | 1807558895 | 15.01 % | 2123505243 | 17.64 % |
| Base Counts Overall T | 8185008255 | 33.99 % | 3998201980 | 33.21 % | 4186806275 | 34.77 % |
| Base Counts Overall N | 161887965 | 0.67 % | 80343168 | 0.67 % | 81544797 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9645812461371966 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 47035175 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 79735040 |
| 150 | 79735040 |
| Insert Size Histogram |
|---|
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