/Martin Hirst/methylation/PX0720_AAGCGA_10_lane_gembs
BACK
SAMPLE PX0720_AAGCGA_10_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26293417 |
19532362 |
74.29 % |
| NonRefCpG |
499406 |
121814 |
24.39 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5904017 |
11.77 % |
4755354 |
11.58 % |
270996 |
31.82 % |
39342 |
11.79 % |
| Intermediate (0.3-0.7) |
7143089 |
14.24 % |
4340777 |
10.57 % |
205954 |
24.18 % |
52714 |
15.80 % |
| Methylated (0.7-1) |
37119088 |
73.99 % |
31974696 |
77.85 % |
374731 |
44.00 % |
241605 |
72.41 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.890 |
|
0.600 |
|
0.870 |
|