/Martin Hirst/PX0681_GCACTT_3_lane_gembs/HCTVVCCXY_4_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 259445734 | 100.00 % | 129722867 | 100.00 % | 129722867 | 100.00 % |
| General Reads | 255936368 | 98.65 % | 128760766 | 99.26 % | 127175602 | 98.04 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 172668 | 0.07 % | 86630 | 0.07 % | 86038 | 0.07 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3336698 | 1.29 % | 875471 | 0.67 % | 2461227 | 1.90 % |
| Bisulfite_reads C2T | 130065095 | 50.13 % | 65439643 | 50.45 % | 64625452 | 49.82 % |
| Bisulfite_reads G2A | 126043941 | 48.58 % | 63407753 | 48.88 % | 62636188 | 48.28 % |
| Concept | Value |
|---|---|
| Unique Fragments | 46851926 |
| Average Unique | 36.12 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 13532052592 | 34.54 % | 6828635930 | 34.86 % | 6703416662 | 34.22 % |
| Base Counts Overall C | 5308493462 | 13.55 % | 2753306257 | 14.06 % | 2555187205 | 13.04 % |
| Base Counts Overall G | 6368107165 | 16.25 % | 3085292216 | 15.75 % | 3282814949 | 16.76 % |
| Base Counts Overall T | 13703920433 | 34.98 % | 6789367258 | 34.66 % | 6914553175 | 35.30 % |
| Base Counts Overall N | 263732182 | 0.67 % | 131551256 | 0.67 % | 132180926 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9612598384597871 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 76659047 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 129722867 |
| 150 | 129722867 |
| Insert Size Histogram |
|---|
 |