/Martin Hirst/PX0681_GCACTT_3_lane_gembs/HCVC2CCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 196004302 | 100.00 % | 98002151 | 100.00 % | 98002151 | 100.00 % |
| General Reads | 192000308 | 97.96 % | 96890881 | 98.87 % | 95109427 | 97.05 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 129250 | 0.07 % | 65008 | 0.07 % | 64242 | 0.07 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3874744 | 1.98 % | 1046262 | 1.07 % | 2828482 | 2.89 % |
| Bisulfite_reads C2T | 97550694 | 49.77 % | 49227449 | 50.23 % | 48323245 | 49.31 % |
| Bisulfite_reads G2A | 94578864 | 48.25 % | 47728440 | 48.70 % | 46850424 | 47.81 % |
| Concept | Value |
|---|---|
| Unique Fragments | 35501803 |
| Average Unique | 36.23 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 10198790174 | 34.46 % | 5159429364 | 34.86 % | 5039360810 | 34.05 % |
| Base Counts Overall C | 4061693711 | 13.72 % | 2096387322 | 14.17 % | 1965306389 | 13.28 % |
| Base Counts Overall G | 4831972771 | 16.33 % | 2330980376 | 15.75 % | 2500992395 | 16.90 % |
| Base Counts Overall T | 10305715334 | 34.82 % | 5112616815 | 34.55 % | 5193098519 | 35.09 % |
| Base Counts Overall N | 198477612 | 0.67 % | 98910924 | 0.67 % | 99566688 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9606832346938948 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 57444141 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 98002151 |
| 150 | 98002151 |
| Insert Size Histogram |
|---|
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