/Martin Hirst/methylation/PX0681_GCACTT_3_lane_gembs
BACK
SAMPLE PX0681_GCACTT_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
24486601 |
8405523 |
34.33 % |
| NonRefCpG |
681353 |
15370 |
2.26 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6791578 |
15.78 % |
3462901 |
17.56 % |
426556 |
41.40 % |
20452 |
24.15 % |
| Intermediate (0.3-0.7) |
10948048 |
25.44 % |
3289097 |
16.68 % |
343204 |
33.31 % |
23535 |
27.80 % |
| Methylated (0.7-1) |
25303080 |
58.79 % |
12966739 |
65.76 % |
260543 |
25.29 % |
40684 |
48.05 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.770 |
|
0.820 |
|
0.400 |
|
0.670 |
|