/EXTERNAL CREST/mapping_coverage/K006475_1_lane_gembs
BACK
SAMPLE K006475_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
402770385 |
100% |
26350075819 |
100% |
| Mapped |
402770385 |
100.00 % |
26350075819 |
100.00 % |
| Passed |
272932116 |
67.76 % |
19497092499 |
73.99 % |
| NotPassed |
129838269 |
32.24 % |
6852983320 |
26.01 % |
| |
|
|
|
|
| LowMAPQ |
67851320 |
16.85 % |
6852983320 |
26.01 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
61986949 |
15.39 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
13793383453 |
100% |
| Passed |
12597301700 |
91.33 % |
| Trimmed |
623997945 |
4.52 % |
| Clipped |
459000860 |
3.33 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
113082948 |
0.82 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |