/EXTERNAL CREST/methylation/K006475_1_lane_gembs

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SAMPLE K006475_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24443372 578495 2.37 %
NonRefCpG 846697 2762 0.33 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006475_1_lane_gembs_coverage_refCpG.png ./IMG//K006475_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006475_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006475_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006475_1_lane_gembs_quality_refcpg.png ./IMG//K006475_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006475_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 13844865 32.28 % 489859 16.03 % 621222 44.79 % 5451 21.79 %
Intermediate (0.3-0.7) 16507743 38.49 % 878261 28.74 % 495144 35.70 % 7673 30.67 %
Methylated (0.7-1) 12538559 29.23 % 1687397 55.22 % 270724 19.52 % 11896 47.55 %
Median Methylation 0.480 0.740 0.350 0.670