/EXTERNAL CREST/methylation/K006474_1_lane_gembs

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SAMPLE K006474_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24800888 2048992 8.26 %
NonRefCpG 674571 11960 1.77 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006474_1_lane_gembs_coverage_refCpG.png ./IMG//K006474_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006474_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006474_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006474_1_lane_gembs_quality_refcpg.png ./IMG//K006474_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006474_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 13885870 30.88 % 1524319 18.76 % 516261 44.49 % 14697 21.29 %
Intermediate (0.3-0.7) 16903747 37.59 % 2390668 29.43 % 408911 35.24 % 21363 30.95 %
Methylated (0.7-1) 14177872 31.53 % 4208860 51.81 % 235207 20.27 % 32959 47.75 %
Median Methylation 0.500 0.710 0.360 0.670