/EXTERNAL CREST/mapping_coverage/K006478_1_lane_gembs
BACK
SAMPLE K006478_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
537979285 |
100% |
35706151234 |
100% |
| Mapped |
537979285 |
100.00 % |
35706151234 |
100.00 % |
| Passed |
321043495 |
59.68 % |
28392880354 |
79.52 % |
| NotPassed |
216935790 |
40.32 % |
7313270880 |
20.48 % |
| |
|
|
|
|
| LowMAPQ |
76179905 |
14.16 % |
7313270880 |
20.48 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
140755885 |
26.16 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
15423729504 |
100% |
| Passed |
14143469575 |
91.70 % |
| Trimmed |
752806981 |
4.88 % |
| Clipped |
345879774 |
2.24 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
181573174 |
1.18 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |