/EXTERNAL CREST/methylation/K006478_1_lane_gembs

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SAMPLE K006478_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24907518 819470 3.29 %
NonRefCpG 604026 3025 0.50 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006478_1_lane_gembs_coverage_refCpG.png ./IMG//K006478_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006478_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006478_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006478_1_lane_gembs_quality_refcpg.png ./IMG//K006478_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006478_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 18554848 41.94 % 1027078 24.51 % 531630 51.49 % 8269 30.50 %
Intermediate (0.3-0.7) 15319958 34.62 % 1158585 27.65 % 347235 33.63 % 8158 30.08 %
Methylated (0.7-1) 10371076 23.44 % 2005142 47.85 % 153559 14.87 % 10690 39.42 %
Median Methylation 0.390 0.670 0.290 0.570