/CEMT/methylation/B19818_2_lane_gembs

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SAMPLE B19818_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27286929 25440027 93.23 %
NonRefCpG 284242 212284 74.68 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//B19818_2_lane_gembs_coverage_refCpG.png ./IMG//B19818_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//B19818_2_lane_gembs_coverage_nonRefCpG.png ./IMG//B19818_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//B19818_2_lane_gembs_quality_refcpg.png ./IMG//B19818_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//B19818_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6409539 12.00 % 5737042 11.21 % 66068 12.37 % 33789 7.54 %
Intermediate (0.3-0.7) 7463312 13.98 % 6732125 13.15 % 90273 16.91 % 63108 14.09 %
Methylated (0.7-1) 39523403 74.02 % 38721044 75.64 % 377602 70.72 % 351021 78.37 %
Median Methylation 0.880 0.890 0.870 0.890