/CEMT/B19820_2_lane_gembs/HYYJWCCXY_3_2

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SAMPLE B19820_2_lane_gembs LANE HYYJWCCXY_3_2

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1003974998 100.00 % 501987499 100.00 % 501987499 100.00 %
General Reads 996286665 99.23 % 499773997 99.56 % 496512668 98.91 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 345726 0.03 % 173374 0.03 % 172352 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7342607 0.73 % 2040128 0.41 % 5302479 1.06 %
Bisulfite_reads C2T 510685842 50.87 % 256048201 51.01 % 254637641 50.73 %
Bisulfite_reads G2A 485946549 48.40 % 243899170 48.59 % 242047379 48.22 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 427555252
Average Unique 85.17 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 57523664899 37.94 % 22940740780 30.26 % 34582924119 45.62 %
Base Counts Overall C 17706735727 11.68 % 838589643 1.11 % 16868146084 22.25 %
Base Counts Overall G 17566123725 11.59 % 16739792172 22.08 % 826331553 1.09 %
Base Counts Overall T 57781773820 38.11 % 34772530779 45.87 % 23009243041 30.36 %
Base Counts Overall N 1021926527 0.67 % 508458975 0.67 % 513467552 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9957254211940191
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 482024795



Mapping Quality

Mapping Quality Histogram
HYYJWCCXY_3_2.mapq.png



Read Length

Read Length Reads
150 501987499
150 501987499



Insert Size Plot

Insert Size Histogram
HYYJWCCXY_3_2.isize.png