/CEMT/mapping_coverage/B19820_2_lane_gembs
BACK
SAMPLE B19820_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1881471755 |
100% |
234469134539 |
100% |
| Mapped |
1871538382 |
99.47 % |
232979128589 |
99.36 % |
| Passed |
1498633974 |
79.65 % |
177043467389 |
75.51 % |
| NotPassed |
372904408 |
19.82 % |
55935661200 |
23.86 % |
| |
|
|
|
|
| LowMAPQ |
244132714 |
12.98 % |
36619907100 |
15.62 % |
| MateUnmapped |
9933373 |
0.53 % |
1490005950 |
0.64 % |
| Duplicate |
108734480 |
5.78 % |
16310172000 |
6.96 % |
| BadOrientation |
208 |
0.00 % |
31200 |
0.00 % |
| LargeInsertSize |
31038 |
0.00 % |
4655700 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20005968 |
1.06 % |
3000895200 |
1.28 % |
| Unmapped |
9933373 |
0.53 % |
1490005950 |
0.64 % |
Base Level Counts
| Bases |
# |
% |
| Total |
224778966900 |
100% |
| Passed |
166719244773 |
74.17 % |
| Trimmed |
6503235763 |
2.89 % |
| Clipped |
340299747 |
0.15 % |
| Overlapping |
47395199764 |
21.09 % |
| LowQuality |
3820986853 |
1.70 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |