/CEMT/methylation/B19820_2_lane_gembs

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SAMPLE B19820_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27290389 25647916 93.98 %
NonRefCpG 279003 213937 76.68 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//B19820_2_lane_gembs_coverage_refCpG.png ./IMG//B19820_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//B19820_2_lane_gembs_coverage_nonRefCpG.png ./IMG//B19820_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//B19820_2_lane_gembs_quality_refcpg.png ./IMG//B19820_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//B19820_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6431714 12.00 % 5780618 11.20 % 55502 10.56 % 27986 6.27 %
Intermediate (0.3-0.7) 5616753 10.48 % 5036115 9.76 % 70901 13.49 % 46429 10.41 %
Methylated (0.7-1) 41568033 77.53 % 40804628 79.05 % 399087 75.95 % 371665 83.32 %
Median Methylation 0.900 0.910 0.900 0.920