/CEMT/mapping_coverage/B35054_1_lane_gembs
BACK
SAMPLE B35054_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
951358427 |
100% |
123168920923 |
100% |
| Mapped |
944083655 |
99.24 % |
122077705123 |
99.11 % |
| Passed |
786367953 |
82.66 % |
98420349823 |
79.91 % |
| NotPassed |
157715702 |
16.58 % |
23657355300 |
19.21 % |
| |
|
|
|
|
| LowMAPQ |
100620072 |
10.58 % |
15093010800 |
12.25 % |
| MateUnmapped |
7274772 |
0.76 % |
1091215800 |
0.89 % |
| Duplicate |
46201873 |
4.86 % |
6930280950 |
5.63 % |
| BadOrientation |
74 |
0.00 % |
11100 |
0.00 % |
| LargeInsertSize |
8494 |
0.00 % |
1274100 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
10885189 |
1.14 % |
1632778350 |
1.33 % |
| Unmapped |
7274772 |
0.76 % |
1091215800 |
0.89 % |
Base Level Counts
| Bases |
# |
% |
| Total |
117946278750 |
100% |
| Passed |
92406166301 |
78.35 % |
| Trimmed |
3475259670 |
2.95 % |
| Clipped |
195919467 |
0.17 % |
| Overlapping |
19330009460 |
16.39 % |
| LowQuality |
2538923852 |
2.15 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |