/CEMT/mapping_coverage/E00609_8_lane_gembs
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SAMPLE E00609_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1734661310 |
100% |
238245405180 |
100% |
| Mapped |
1705107572 |
98.30 % |
233812344480 |
98.14 % |
| Passed |
520987576 |
30.03 % |
56194345080 |
23.59 % |
| NotPassed |
1184119996 |
68.26 % |
177617999400 |
74.55 % |
| |
|
|
|
|
| LowMAPQ |
853896816 |
49.23 % |
128084522400 |
53.76 % |
| MateUnmapped |
29553738 |
1.70 % |
4433060700 |
1.86 % |
| Duplicate |
30747541 |
1.77 % |
4612131150 |
1.94 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
1494072 |
0.09 % |
224110800 |
0.09 % |
| |
|
|
|
|
| NotCorrectlyAligned |
297981567 |
17.18 % |
44697235050 |
18.76 % |
| Unmapped |
29553738 |
1.70 % |
4433060700 |
1.86 % |
Base Level Counts
| Bases |
# |
% |
| Total |
78048284850 |
100% |
| Passed |
52172711343 |
66.85 % |
| Trimmed |
1855411737 |
2.38 % |
| Clipped |
5144594549 |
6.59 % |
| Overlapping |
16709345221 |
21.41 % |
| LowQuality |
2166222000 |
2.78 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |