/CEMT/E00611_8_lane_gembs/HYCF2CCXY_2_2

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SAMPLE E00611_8_lane_gembs LANE HYCF2CCXY_2_2

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 202863770 100.00 % 101431885 100.00 % 101431885 100.00 %
General Reads 194961597 96.10 % 98289602 96.90 % 96671995 95.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1629265 0.80 % 827573 0.82 % 801692 0.79 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6272908 3.09 % 2314710 2.28 % 3958198 3.90 %
Bisulfite_reads C2T 99994641 49.29 % 50408088 49.70 % 49586553 48.89 %
Bisulfite_reads G2A 96596221 47.62 % 48709087 48.02 % 47887134 47.21 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 32124346
Average Unique 31.67 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 10780386931 35.19 % 5674240382 37.05 % 5106146549 33.34 %
Base Counts Overall C 4604499920 15.03 % 2590831790 16.92 % 2013668130 13.15 %
Base Counts Overall G 4740885392 15.48 % 2069105197 13.51 % 2671780195 17.44 %
Base Counts Overall T 10300858466 33.63 % 4879392075 31.86 % 5421466391 35.40 %
Base Counts Overall N 205798561 0.67 % 102645191 0.67 % 103153370 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9475179226999406
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 54486000



Mapping Quality

Mapping Quality Histogram
HYCF2CCXY_2_2.mapq.png



Read Length

Read Length Reads
150 101431885
150 101431885



Insert Size Plot

Insert Size Histogram
HYCF2CCXY_2_2.isize.png