/CEMT/mapping_coverage/E00611_8_lane_gembs
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SAMPLE E00611_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1618195316 |
100% |
222381479264 |
100% |
| Mapped |
1591280607 |
98.34 % |
218344272914 |
98.18 % |
| Passed |
479261639 |
29.62 % |
51541427714 |
23.18 % |
| NotPassed |
1112018968 |
68.72 % |
166802845200 |
75.01 % |
| |
|
|
|
|
| LowMAPQ |
802303814 |
49.58 % |
120345572100 |
54.12 % |
| MateUnmapped |
26914709 |
1.66 % |
4037206350 |
1.82 % |
| Duplicate |
31522203 |
1.95 % |
4728330450 |
2.13 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
1143326 |
0.07 % |
171498900 |
0.08 % |
| |
|
|
|
|
| NotCorrectlyAligned |
277049625 |
17.12 % |
41557443750 |
18.69 % |
| Unmapped |
26914709 |
1.66 % |
4037206350 |
1.82 % |
Base Level Counts
| Bases |
# |
% |
| Total |
71784419250 |
100% |
| Passed |
47956210118 |
66.81 % |
| Trimmed |
1705994780 |
2.38 % |
| Clipped |
4705150679 |
6.55 % |
| Overlapping |
15537840857 |
21.65 % |
| LowQuality |
1879222816 |
2.62 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |