/CEMT/mapping_coverage/A95342_2_lane_gembs
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SAMPLE A95342_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1818778846 |
100% |
227586459155 |
100% |
| Mapped |
1808614378 |
99.44 % |
226061788955 |
99.33 % |
| Passed |
1427604442 |
78.49 % |
168910298555 |
74.22 % |
| NotPassed |
381009936 |
20.95 % |
57151490400 |
25.11 % |
| |
|
|
|
|
| LowMAPQ |
251475446 |
13.83 % |
37721316900 |
16.57 % |
| MateUnmapped |
10164468 |
0.56 % |
1524670200 |
0.67 % |
| Duplicate |
103935208 |
5.71 % |
15590281200 |
6.85 % |
| BadOrientation |
236 |
0.00 % |
35400 |
0.00 % |
| LargeInsertSize |
55694 |
0.00 % |
8354100 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
25543352 |
1.40 % |
3831502800 |
1.68 % |
| Unmapped |
10164468 |
0.56 % |
1524670200 |
0.67 % |
Base Level Counts
| Bases |
# |
% |
| Total |
214126626000 |
100% |
| Passed |
158649764929 |
74.09 % |
| Trimmed |
6135831384 |
2.87 % |
| Clipped |
353496211 |
0.17 % |
| Overlapping |
44862831234 |
20.95 % |
| LowQuality |
4124702242 |
1.93 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |