/CEMT/methylation/A95342_2_lane_gembs

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SAMPLE A95342_2_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27269948 24202641 88.75 %
NonRefCpG 283969 201033 70.79 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A95342_2_lane_gembs_coverage_refCpG.png ./IMG//A95342_2_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A95342_2_lane_gembs_coverage_nonRefCpG.png ./IMG//A95342_2_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A95342_2_lane_gembs_quality_refcpg.png ./IMG//A95342_2_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A95342_2_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6739028 12.68 % 5551610 11.17 % 72755 13.66 % 35308 8.10 %
Intermediate (0.3-0.7) 10581281 19.91 % 9287930 18.69 % 120033 22.53 % 86919 19.95 %
Methylated (0.7-1) 35828838 67.41 % 34865956 70.15 % 340020 63.82 % 313465 71.95 %
Median Methylation 0.830 0.840 0.810 0.850