/EXTERNAL ENCODE/K005734_K005709_2_lane_gembs

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SAMPLE K005734_K005709_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 3632032234 100.00 % 1816016117 100.00 % 1816016117 100.00 %
General Reads 3575757784 98.45 % 1800232685 99.13 % 1775525099 97.77 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 7059646 0.19 % 3555637 0.20 % 3504009 0.19 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 49214804 1.36 % 12227795 0.67 % 36987009 2.04 %
Bisulfite_reads C2T 1817071817 50.03 % 914400664 50.35 % 902671153 49.71 %
Bisulfite_reads G2A 1765745613 48.62 % 889387658 48.97 % 876357955 48.26 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 1329268001
Average Unique 73.20 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 214070771246 39.03 % 92355350702 33.68 % 121715420544 44.39 %
Base Counts Overall C 57196307136 10.43 % 3277255937 1.20 % 53919051199 19.66 %
Base Counts Overall G 59125014656 10.78 % 54649157985 19.93 % 4475856671 1.63 %
Base Counts Overall T 214353509740 39.08 % 122093169843 44.52 % 92260339897 33.64 %
Base Counts Overall N 3691264556 0.67 % 1843499200 0.67 % 1847765356 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9911636020611895
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1472347238



Mapping Quality

Mapping Quality Histogram
K005734_K005709_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005734_K005709_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF799UTJ_150bp_chastity
ENCFF457XMZ_150bp_chastity