/cemt/mapping_coverage/K005744_0_lane_gembs
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SAMPLE K005744_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1722962213 |
100% |
211965723678 |
100% |
| Mapped |
1707866132 |
99.12 % |
209701311528 |
98.93 % |
| Passed |
1128641698 |
65.51 % |
122817646428 |
57.94 % |
| NotPassed |
579224434 |
33.62 % |
86883665100 |
40.99 % |
| |
|
|
|
|
| LowMAPQ |
459525330 |
26.67 % |
68928799500 |
32.52 % |
| MateUnmapped |
15096081 |
0.88 % |
2264412150 |
1.07 % |
| Duplicate |
67985511 |
3.95 % |
10197826650 |
4.81 % |
| BadOrientation |
1072 |
0.00 % |
160800 |
0.00 % |
| LargeInsertSize |
90152 |
0.01 % |
13522800 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
51622369 |
3.00 % |
7743355350 |
3.65 % |
| Unmapped |
15096081 |
0.88 % |
2264412150 |
1.07 % |
Base Level Counts
| Bases |
# |
% |
| Total |
169210962000 |
100% |
| Passed |
114973314776 |
67.95 % |
| Trimmed |
4643542473 |
2.74 % |
| Clipped |
486242943 |
0.29 % |
| Overlapping |
45907072629 |
27.13 % |
| LowQuality |
3200789179 |
1.89 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |