/cemt/methylation/K005744_0_lane_gembs

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SAMPLE K005744_0_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27077679 20281521 74.90 %
NonRefCpG 298836 184575 61.76 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005744_0_lane_gembs_coverage_refCpG.png ./IMG//K005744_0_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005744_0_lane_gembs_coverage_nonRefCpG.png ./IMG//K005744_0_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005744_0_lane_gembs_quality_refcpg.png ./IMG//K005744_0_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005744_0_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4592510 8.81 % 1632247 3.84 % 72088 12.90 % 19685 4.81 %
Intermediate (0.3-0.7) 10281843 19.72 % 6877268 16.17 % 115892 20.74 % 67552 16.50 %
Methylated (0.7-1) 37267527 71.47 % 34030787 80.00 % 370815 66.36 % 322076 78.69 %
Median Methylation 0.850 0.870 0.820 0.870