/cemt/mapping_coverage/K005716_0_lane_gembs
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SAMPLE K005716_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1511323618 |
100% |
196649358538 |
100% |
| Mapped |
1482999617 |
98.13 % |
192400758388 |
97.84 % |
| Passed |
681844333 |
45.12 % |
72227465788 |
36.73 % |
| NotPassed |
801155284 |
53.01 % |
120173292600 |
61.11 % |
| |
|
|
|
|
| LowMAPQ |
500107652 |
33.09 % |
75016147800 |
38.15 % |
| MateUnmapped |
28324001 |
1.87 % |
4248600150 |
2.16 % |
| Duplicate |
243884760 |
16.14 % |
36582714000 |
18.60 % |
| BadOrientation |
882 |
0.00 % |
132300 |
0.00 % |
| LargeInsertSize |
72480 |
0.00 % |
10872000 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
57089510 |
3.78 % |
8563426500 |
4.35 % |
| Unmapped |
28324001 |
1.87 % |
4248600150 |
2.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
102064188450 |
100% |
| Passed |
67498365807 |
66.13 % |
| Trimmed |
2706606574 |
2.65 % |
| Clipped |
480659328 |
0.47 % |
| Overlapping |
29356063334 |
28.76 % |
| LowQuality |
2022493407 |
1.98 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |