/cemt/methylation/K005716_0_lane_gembs

BACK

SAMPLE K005716_0_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26863617 19815837 73.76 %
NonRefCpG 304874 188048 61.68 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005716_0_lane_gembs_coverage_refCpG.png ./IMG//K005716_0_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005716_0_lane_gembs_coverage_nonRefCpG.png ./IMG//K005716_0_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005716_0_lane_gembs_quality_refcpg.png ./IMG//K005716_0_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005716_0_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4797927 9.18 % 1866362 4.39 % 63918 11.17 % 18639 4.43 %
Intermediate (0.3-0.7) 12348899 23.63 % 8880205 20.87 % 140048 24.47 % 88888 21.13 %
Methylated (0.7-1) 35115478 67.19 % 31793972 74.74 % 368388 64.36 % 313147 74.44 %
Median Methylation 0.810 0.840 0.800 0.840