/cemt/mapping_coverage/K005742_0_lane_gembs
BACK
SAMPLE K005742_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1600348961 |
100% |
205106679683 |
100% |
| Mapped |
1588148037 |
99.24 % |
203276541083 |
99.11 % |
| Passed |
953583482 |
59.59 % |
108091857833 |
52.70 % |
| NotPassed |
634564555 |
39.65 % |
95184683250 |
46.41 % |
| |
|
|
|
|
| LowMAPQ |
347470596 |
21.71 % |
52120589400 |
25.41 % |
| MateUnmapped |
12200924 |
0.76 % |
1830138600 |
0.89 % |
| Duplicate |
232371454 |
14.52 % |
34855718100 |
16.99 % |
| BadOrientation |
844 |
0.00 % |
126600 |
0.00 % |
| LargeInsertSize |
45508 |
0.00 % |
6826200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
54676153 |
3.42 % |
8201422950 |
4.00 % |
| Unmapped |
12200924 |
0.76 % |
1830138600 |
0.89 % |
Base Level Counts
| Bases |
# |
% |
| Total |
142899918000 |
100% |
| Passed |
102241493250 |
71.55 % |
| Trimmed |
4124522224 |
2.89 % |
| Clipped |
275334005 |
0.19 % |
| Overlapping |
34532726162 |
24.17 % |
| LowQuality |
1725842359 |
1.21 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |