/cemt/methylation/K005742_0_lane_gembs

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SAMPLE K005742_0_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27069979 20382227 75.29 %
NonRefCpG 283066 171598 60.62 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005742_0_lane_gembs_coverage_refCpG.png ./IMG//K005742_0_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005742_0_lane_gembs_coverage_nonRefCpG.png ./IMG//K005742_0_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005742_0_lane_gembs_quality_refcpg.png ./IMG//K005742_0_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005742_0_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5302884 10.07 % 2101700 4.85 % 67086 12.60 % 20771 5.30 %
Intermediate (0.3-0.7) 12148939 23.06 % 8734591 20.15 % 127448 23.94 % 79737 20.35 %
Methylated (0.7-1) 35222703 66.87 % 32518069 75.01 % 337887 63.46 % 291348 74.35 %
Median Methylation 0.820 0.850 0.800 0.840