/cemt/mapping_coverage/K005739_0_lane_gembs
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SAMPLE K005739_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1442239700 |
100% |
182910403309 |
100% |
| Mapped |
1414772081 |
98.10 % |
178790260459 |
97.75 % |
| Passed |
770433137 |
53.42 % |
82139418859 |
44.91 % |
| NotPassed |
644338944 |
44.68 % |
96650841600 |
52.84 % |
| |
|
|
|
|
| LowMAPQ |
387785028 |
26.89 % |
58167754200 |
31.80 % |
| MateUnmapped |
27467619 |
1.90 % |
4120142850 |
2.25 % |
| Duplicate |
173122418 |
12.00 % |
25968362700 |
14.20 % |
| BadOrientation |
1036 |
0.00 % |
155400 |
0.00 % |
| LargeInsertSize |
51826 |
0.00 % |
7773900 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
83378636 |
5.78 % |
12506795400 |
6.84 % |
| Unmapped |
27467619 |
1.90 % |
4120142850 |
2.25 % |
Base Level Counts
| Bases |
# |
% |
| Total |
115442652000 |
100% |
| Passed |
75387420784 |
65.30 % |
| Trimmed |
3117971376 |
2.70 % |
| Clipped |
431092713 |
0.37 % |
| Overlapping |
32872140428 |
28.47 % |
| LowQuality |
3634026699 |
3.15 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |