/cemt/mapping_coverage/K005728_1_lane_gembs
BACK
SAMPLE K005728_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1597437960 |
100% |
206587767678 |
100% |
| Mapped |
1582707581 |
99.08 % |
204378210828 |
98.93 % |
| Passed |
904278571 |
56.61 % |
102613859328 |
49.67 % |
| NotPassed |
678429010 |
42.47 % |
101764351500 |
49.26 % |
| |
|
|
|
|
| LowMAPQ |
364891362 |
22.84 % |
54733704300 |
26.49 % |
| MateUnmapped |
14730379 |
0.92 % |
2209556850 |
1.07 % |
| Duplicate |
224123153 |
14.03 % |
33618472950 |
16.27 % |
| BadOrientation |
990 |
0.00 % |
148500 |
0.00 % |
| LargeInsertSize |
56340 |
0.00 % |
8451000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
89357165 |
5.59 % |
13403574750 |
6.49 % |
| Unmapped |
14730379 |
0.92 % |
2209556850 |
1.07 % |
Base Level Counts
| Bases |
# |
% |
| Total |
135520809300 |
100% |
| Passed |
96057138889 |
70.88 % |
| Trimmed |
3880345277 |
2.86 % |
| Clipped |
399200918 |
0.29 % |
| Overlapping |
32507749054 |
23.99 % |
| LowQuality |
2676375162 |
1.97 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |