/cemt/mapping_coverage/K005713_0_lane_gembs
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SAMPLE K005713_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
951669964 |
100% |
122240613075 |
100% |
| Mapped |
926613773 |
97.37 % |
118482184425 |
96.93 % |
| Passed |
519094326 |
54.55 % |
57354267375 |
46.92 % |
| NotPassed |
407519447 |
42.82 % |
61127917050 |
50.01 % |
| |
|
|
|
|
| LowMAPQ |
242848932 |
25.52 % |
36427339800 |
29.80 % |
| MateUnmapped |
25056191 |
2.63 % |
3758428650 |
3.07 % |
| Duplicate |
112914495 |
11.86 % |
16937174250 |
13.86 % |
| BadOrientation |
370 |
0.00 % |
55500 |
0.00 % |
| LargeInsertSize |
46648 |
0.00 % |
6997200 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
51709002 |
5.43 % |
7756350300 |
6.35 % |
| Unmapped |
25056191 |
2.63 % |
3758428650 |
3.07 % |
Base Level Counts
| Bases |
# |
% |
| Total |
77818857750 |
100% |
| Passed |
51016132344 |
65.56 % |
| Trimmed |
2059799525 |
2.65 % |
| Clipped |
413128934 |
0.53 % |
| Overlapping |
20051461441 |
25.77 % |
| LowQuality |
4278335506 |
5.50 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |