/cemt/mapping_coverage/K005743_0_lane_gembs
BACK
SAMPLE K005743_0_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1613244272 |
100% |
204713017861 |
100% |
| Mapped |
1593122494 |
98.75 % |
201694751161 |
98.53 % |
| Passed |
800775999 |
49.64 % |
82842776911 |
40.47 % |
| NotPassed |
792346495 |
49.12 % |
118851974250 |
58.06 % |
| |
|
|
|
|
| LowMAPQ |
545846530 |
33.84 % |
81876979500 |
40.00 % |
| MateUnmapped |
20121778 |
1.25 % |
3018266700 |
1.47 % |
| Duplicate |
203373024 |
12.61 % |
30505953600 |
14.90 % |
| BadOrientation |
1222 |
0.00 % |
183300 |
0.00 % |
| LargeInsertSize |
162804 |
0.01 % |
24420600 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
42962915 |
2.66 % |
6444437250 |
3.15 % |
| Unmapped |
20121778 |
1.25 % |
3018266700 |
1.47 % |
Base Level Counts
| Bases |
# |
% |
| Total |
119915513100 |
100% |
| Passed |
77802932414 |
64.88 % |
| Trimmed |
3192048166 |
2.66 % |
| Clipped |
421595235 |
0.35 % |
| Overlapping |
36651140954 |
30.56 % |
| LowQuality |
1847796331 |
1.54 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |