/cemt/methylation/K005743_0_lane_gembs

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SAMPLE K005743_0_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26868322 16726031 62.25 %
NonRefCpG 348809 151860 43.54 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K005743_0_lane_gembs_coverage_refCpG.png ./IMG//K005743_0_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K005743_0_lane_gembs_coverage_nonRefCpG.png ./IMG//K005743_0_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K005743_0_lane_gembs_quality_refcpg.png ./IMG//K005743_0_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K005743_0_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4690984 9.42 % 1488925 4.18 % 136359 21.34 % 34016 8.98 %
Intermediate (0.3-0.7) 12464605 25.02 % 7149975 20.09 % 165804 25.95 % 84347 22.27 %
Methylated (0.7-1) 32663984 65.56 % 26947884 75.72 % 336792 52.71 % 260393 68.75 %
Median Methylation 0.810 0.850 0.720 0.820