/CEMT/mapping_coverage/B33199_1_lane_gembs
BACK
SAMPLE B33199_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
791162811 |
100% |
104773657341 |
100% |
| Mapped |
782142956 |
98.86 % |
103420679091 |
98.71 % |
| Passed |
647940931 |
81.90 % |
83290375341 |
79.50 % |
| NotPassed |
134202025 |
16.96 % |
20130303750 |
19.21 % |
| |
|
|
|
|
| LowMAPQ |
80381622 |
10.16 % |
12057243300 |
11.51 % |
| MateUnmapped |
9019855 |
1.14 % |
1352978250 |
1.29 % |
| Duplicate |
45561827 |
5.76 % |
6834274050 |
6.52 % |
| BadOrientation |
44 |
0.00 % |
6600 |
0.00 % |
| LargeInsertSize |
5534 |
0.00 % |
830100 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
8252998 |
1.04 % |
1237949700 |
1.18 % |
| Unmapped |
9019855 |
1.14 % |
1352978250 |
1.29 % |
Base Level Counts
| Bases |
# |
% |
| Total |
97183052250 |
100% |
| Passed |
77645216415 |
79.90 % |
| Trimmed |
2831103057 |
2.91 % |
| Clipped |
212327970 |
0.22 % |
| Overlapping |
13680348939 |
14.08 % |
| LowQuality |
2814055869 |
2.90 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |